I made a conscious effort this past weekend to watch Brady and Manning throw the ball. Both I believe had over 300 yards passing and a TD or two.
While they did throw the occasional deep ball, or deep out, it's not like these star Qb's aren't throwing it short or intermediate. They aren't chucking it deep time and time again.
The difference is, they put it in spots where their playmakers can make plays. Get it to Bowe in the open field in front of him where he can run. Dude's a monster. Same with Jamaal. Get it to him on some set up screens where they are developed correctly. Breaston, Baldwin, Draughn, Gray, whoever.