Check out Community Home Lending in Overland Park. We went through them last fall and couldn't have been happier. They took the time to learn about our situation and structured a loan that met our needs perfectly. That was done with the lowest rate we could find and very reasonable closing costs.
I would absolutely stay away from the commercial places. We got quotes from them and their fees were much higher. I guess those commercials aren't cheap.
My advice would be to get a quote from Cap Fed and at least one local mortgage banker.
Best of luck!